PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009443
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 454aa    MW: 49157.8 Da    PI: 6.9977
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-13176PU_refplantGDBView CDS
gnl|UG|Pgl#S55348087PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.83.2e-27188269371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   +++k+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Pgl009443 188 GRGLRQFSMK---VCQKVESkGRTTYNEVADELVAEyanpnsalispdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 269
                689*******...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-46183274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.9E-35186269IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-21189270IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.0E-25189269IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.62E-42274377IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.78E-38276381No hitNo description
SMARTSM011383.3E-54276453IPR014889Transcription factor DP, C-terminal
PfamPF087811.8E-37277382IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLPRGPSRRG GSTTGPRSGV RSRKTTITQS HVANNPNNTS SYNNSSISNS NGVHNDPIHE  60
AGIHSYAEGL GIVQNGAIAT PIGMNATEYN PDAAKEEGEY PSTISNGMVG GYSGNLTSLP  120
GQSVSMDSGS NCSPSRGSDV VMATPGPSSA FARLHHLDGQ GEDFETPDTV GTRKKKRGPR  180
AIGGEKGGRG LRQFSMKVCQ KVESKGRTTY NEVADELVAE YANPNSALIS PDQQQYDEKN  240
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PSTSPNDLEH LKADRMGLRS RIEKKMGYLQ  300
ELEDQIIGLQ NLVKRNERED GSGNTPSGGV ALPFILVQTR PQATVEIEIS EDMQLVHFDF  360
NSTPFELHDD AYVLKAMGFC EKPFTDGMDV TGHDSFANGA GFGENNIPIT NMYRHNLPSH  420
LRTTGGSFSM SCATGKNCTS PPVPGILKAR VKHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-37180275194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.171770.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253993.11e-159PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-127DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD5ABL10.0D5ABL1_PICSI; Putative uncharacterized protein
STRINGGSMUA_Achr1P00430_0011e-138(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-128Transcription factor DP